PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003648m
Common NameCICLE_v10003648mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 267aa    MW: 29785.9 Da    PI: 9.7104
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003648mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.3e-06109128120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C k+F+r  nL+ H+
  Ciclev10003648m 109 FSCHVCFKTFNRYNNLQMHM 128
                      89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.99E-5103131No hitNo description
Gene3DG3DSA:3.30.160.603.0E-4109128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
METQNLSCHS SNVFAISSTN HIQIEPLNLF PSVTYNSNGG STEPQPSLNQ NRKARNEEKD  60
DVAVALHIGL PNYSHSSTNP SAKGNANVAA AKQYWIPTPE QILIGFTHFS CHVCFKTFNR  120
YNNLQMHMWG HGSQYRKGPE SLKGTQPRAI LGIPCYCCAE GCKNSINHPK AKPLKDFRTL  180
QTHYKRKHGL KPFMCRKCGK FLAVKGDWRT HEKNCGKRWL CVCGSDFKHK RSLKDHIKAF  240
GSGHGPFSRP FDGVEVLDDA SSSLLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433965.10.0hypothetical protein CICLE_v10003648mg
SwissprotQ8VWG31e-115TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLV4T6Z80.0V4T6Z8_9R
STRINGPOPTR_0002s09840.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-116C2H2 family protein